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Geochemistry of sediments from Fehmarn Belt area, southern Baltic Sea during cruise EMB238

The geochemical composition of surface sediments and pore waters from the Fehmarn Belt area, southern Baltic Sea, was analyzed in the context of the establishment of exclusion areas for bottom trawling activity. Samples were taken on cruise EMB238 in May/June 2020 using a multi corer or benthic lander device. Besides on-site measurements, further dissolved major and trace elements, dissolved inorganic carbon, nutrients were analyzed in home laboratory. Results are complemented by the analysis of potential microbial gross sulfate reduction rates and the geochemical composition of CNS and extractable sulfur (AVS, CrS(II), and acid-extractable Fe, Zn, Pb, Fe, Mn contents.

Geochemistry of pore waters from Fehmarn Belt area, southern Baltic Sea during cruise EMB238

The geochemical composition of surface sediments and pore waters from the Fehmarn Belt area, southern Baltic Sea, was analyzed in the context of the establishment of exclusion areas for bottom trawling activity. Samples were taken on cruise EMB238 in May/June 2020 using a multi corer or benthic lander device. Besides on-site measurements, further dissolved major and trace elements, dissolved inorganic carbon, nutrients were analyzed in home laboratory. Results are complemented by the analysis of potential microbial gross sulfate reduction rates and the geochemical composition of CNS and extractable sulfur (AVS, CrS(II), and acid-extractable Fe, Zn, Pb, Fe, Mn contents.

Microbial sulfate reduction rates in sediments from Fehmarn Belt area, southern Baltic Sea during cruise EMB238

The geochemical composition of surface sediments and pore waters from the Fehmarn Belt area, southern Baltic Sea, was analyzed in the context of the establishment of exclusion areas for bottom trawling activity. Samples were taken on cruise EMB238 in May/June 2020 using a multi corer or benthic lander device. Besides on-site measurements, further dissolved major and trace elements, dissolved inorganic carbon, nutrients were analyzed in home laboratory. Results are complemented by the analysis of potential microbial gross sulfate reduction rates and the geochemical composition of CNS and extractable sulfur (AVS, CrS(II), and acid-extractable Fe, Zn, Pb, Fe, Mn contents.

Total organic carbon in sediment cores from the Kiel Bight, SW Baltic Sea from 2016 to 2025

This dataset presents total organic carbon (TOC, wt%) contents in sediments at 19 stations in the Kiel Bight taken during the research cruises BE03/2016 (08.03.2016), BE10/2016 (19.10.2016), BE10/2018 (23.10.2018), BE03/2019 (15.03.2019), L23-13 (13.09.2023 - 15.09.2023), Sagitta24-1 (16.09.2024), Sagitta24-2 (23.09.2024), L25-2b (09.02.2025 - 17.02.2025) and EMB374 (04.09.2025 - 13.09.2025). Sediment cores (<50cm) were recovered using a Multicorer (MUC), Minicorer (MIC) or Rumohrlot (RL). The TOC analysis was performed using an Element Analyzer (Euro EA 3000). The data are used in combination with porewater and water column data to describe the sulfur geochemistry and cycling across different sites in the Kiel Bight and to identify the controlling factors governing the accumulation of hydrogen sulfide at the seafloor.

Geochemistry of pore waters and microbial sulfate reduction rates in sediments from Fehmarn Belt area, southern Baltic Sea during cruise EMB238

The geochemical composition of surface sediments and pore waters from the Fehmarn Belt area, southern Baltic Sea, was analyzed in the context of the establishment of exclusion areas for bottom trawling activity. Samples were taken on cruise EMB238 in May/June 2020 using a multi corer or benthic lander device. Besides on-site measurements, further dissolved major and trace elements, dissolved inorganic carbon, nutrients were analyzed in home laboratory. Results are complemented by the analysis of potential microbial gross sulfate reduction rates and the geochemical composition of CNS and extractable sulfur (AVS, CrS(II), and acid-extractable Fe, Zn, Pb, Fe, Mn contents.

Porewater ion concentrations and total alkalinity in the Kiel Bight, SW Baltic Sea from 2016 to 2025

This dataset presents porewater and bottom water data from 63 stations in the Kiel Bight taken during the research cruises BE03/2016 (08.03.2016), BE10/2016 (19.10.2016), BE10/2018 (23.10.2018), BE03/2019 (15.03.2019), L23-13 (13.09.2023 - 15.09.2023), Sagitta24-1 (16.09.2024), Sagitta24-2 (23.09.2024), L25-2b (09.02.2025 - 17.02.2025) and EMB374 (04.09.2025 - 13.09.2025). Short sediment cores (<50cm) were recovered using a Multicorer (MUC), Minicorer (MIC) or Rumohrlot (RL). At 22 of those stations, bottom water and porewater samples were analysed for total alkalinity (TA), ammonium (NH4+), sulfate (SO42-), hydrogen sulfide (H2S), dissolved iron (Fe2+) and dissolved manganese (Mn2+). At 41 stations, exclusively a bottom water sample was taken for H2S measurements. Bottom waters were sampled from the supernatant water in the sediment cores. Porewater samples were extracted from the sediments using rhizones. TA was determined by titration (METROHM 876 Dosimat Plus), NH4+ and H2S using a photometer (Hitachi U-2900), SO42- by Ion Chromatography (METROHM 761 Compact) and Fe2+ and Mn2+ by Inductively Coupled Plasma Optical Emission Spectroscopy (Varian 720-ES). The collected data will be used to determine the spatial and temporal variability of hydrogen sulfide in bottom waters of the Kiel Bight, (ii) identify the controlling factors governing the accumulation of hydrogen sulfide at the seafloor, and (iii) establish an early warning system of sulfidic seafloor conditions for regional stakeholders in the Baltic Sea.

Water column, solid phase and porewater data in the Kiel Bight, SW Baltic Sea from 2016 to 2025

During the research cruises BE03/2016 (08.03.2016), BE10/2016 (19.10.2016), BE10/2018 (23.10.2018), BE03/2019 (15.03.2019), L23-13 (13.09.2023 - 15.09.2023), Sagitta24-1 (16.09.2024), Sagitta24-2 (23.09.2024), Hai24VE2 (24.09.2024), L25-2b (09.02.2025 - 17.02.2025) and EMB374 (04.09.2025 - 13.09.2025), CTDs were deployed and sediment corers were retrieved at 99 stations in Kiel Bight in the southwestern Baltic Sea. Water column oxygen concentrations were determined using oxygen sensors attached to the CTD framework. At selected water depths, water samples were collected with Niskin bottles for the analysis of nitrate concentrations using an autoanalyzer. Short sediment cores (<50cm) were recovered using a Multicorer (MUC), Minicorer (MIC) or Rumohrlot (RL). Bottom waters were sampled from the supernatant water in the sediment cores. Solid phase sediment samples were analyzed for total organic carbon using an element analyzer. Porewater was extracted from the sediment cores using rhizones and analyzed for total alkalinity (titration), ammonium (photometer), sulfate (ion chromatography), hydrogen sulfide (photometer), dissolved iron (ICP-OES) and dissolved manganese (ICP-OES). The collected data will be used to (i) determine the spatial and temporal variability of hydrogen sulfide in bottom waters of the Kiel Bight, (ii) identify the controlling factors governing the accumulation of hydrogen sulfide at the seafloor, and (iii) establish an early warning system of sulfidic seafloor conditions for regional stakeholders in the Baltic Sea.

Surface water parameters (pH, specific conductivity, salinity, nutrients, oxygen, sulfate and chloride concentrations, DOC/DIC) (Table 4)

Surface water parameters were measured in parallel to the gas measurements and soil coring for microbial analyses. Most surface water variables (pH, specific conductivity, salinity, nutrients, oxygen, sulfate and chloride concentrations, DOC/DIC) were measured in-situ using a multiparameter digital water quality meter or taken to the laboratory as water samples for further analysis. While surface water analysis was only conducted in the drainage ditch before rewetting, it was done along the entire transect after rewetting.

Pore water and soil variables (pH, specific conductivity, nutrients, metals, sulfate and chloride concentrations, CNS) (Table 3)

Pore water parameters were measured in parallel to the gas measurements and soil coring for microbial analyses. Pore water/soil variables (pH, specific conductivity, nutrients, metals, sulfate and chloride concentrations, CNS) were either measured in-situ or taken to the laboratory as soil samples. Pore water/soil analysis was mostly conducted before rewetting and only repeated occasionally after rewetting where possible.

Brackish water rewetting of a temperate coastal peatland in NE Germany: Effects on Biogeochemistry, Microorganisms and Greenhouse gas emissions

The rewetting of drained peatlands is a promising measure to mitigate carbon dioxide (CO2) emissions by preventing the further mineralization of the peat soil through aeration. While freshwater rewetted peatlands can be significant methane (CH4) sources in the short-term, in coastal ecosystems the input of sulfate-rich seawater could potentially mitigate these emissions. The purpose of the data collection was to examine whether the presence of sulfate, known as an alternative electron acceptor, can cause lower CH4 production and thus, emissions by favoring the growth of sulfate-reducers, which outcompete methanogens for substrate. We therefore investigated underlying variables such as the methane-cycling microbial community along with CH4 fluxes and set them in context with CO2 fluxes along a transect in a coastal peatland before and directly after rewetting. In this way, a conclusion about the short-term greenhouse gas mitigation potential of brackish water rewetting of coastal peatlands could be drawn. This data collection consists of six data sets, with direct comparisons before and after rewetting of CO2 and CH4 fluxes (Tab. 2) and associated microbial communities (Tab. 1) being the main data. Pore water geochemistry (Tab. 1 and 3) and surface water parameters (Tab. 4) were collected simultaneously to provide potential explanatory variables. The sampling of continuous water level (Tab. 5) within wells and atmospheric weather data (air and soil temperature, relative humidity, photosynthetic photon flux density; Tab. 6) from a weather station was done in addition. Measurements started in June/July/August 2019 after field installation was finalized and were conducted on the drained coastal fen "Polder Drammendorf" on the island of Rügen in North-East Germany. On 26th November 2019, the dike was opened and channeled in order to rewet the peatland with brackish water. Before, the dike separated the peatland from the adjacent bay "Kubitzer Bodden", which is part of a brackish lagoon system connected to the Baltic Sea. Therefore, the peatland was nearly completely flooded and now resembles a shallow lagoon with high fluctuating water levels. We measured along a humidity (pre-rewetting)/water level (post-rewetting) gradient (stations 0-8) towards and across the main North-South oriented drainage ditch, including four stations on the Eastern side of the ditch (1–4), two ditch stations (0, 5) and two stations (6, 7) on the Western side of the ditch. Station 8 was chosen as an additional station farther towards the adjacent bay on the Western side, but was only accessible before rewetting. CH4 and CO2 fluxes (stations 0-7) were calculated from online gas concentrations measurements using laser-based analyzers and manual closed chambers (Livingston, G. P., & Hutchinson, G. (1995). Enclosure-based measurement of trace gas exchange: Applications and sources of error. In P.A. Matson, & R.C. Harriss (Eds.). Biogenic trace gases: Measuring emissions from soil and water (pp. 14–51). Blackwell Science Ltd., Oxford, UK). Soil cores for microbial, dissolved gas concentrations and isotopic analysis were taken using a Russian type peat corer (De Vleeschouwer, F., Chambers, F. M., & Swindles, G. T. (2010). Coring and sub-sampling of peatlands for palaeoenvironmental research. Mires and Peat, 7, 1–10) before and after rewetting. Each time, we took duplicates at stations 1-8 for this rather labor-intensive process and divided the core into four depth sections: surface, 5–20, 20–40 and 40–50 cm. Subsamples for dissolved gases and stable carbon isotope analyses were taken with tip-cut syringes with a distinct volume of 3 ml (Omnifix, Braun, Bad Arolsen, Germany) and immediately placed into NaCl-saturated vials (20 ml, Agilent Technologies, 5182-0837, Santa Clara, USA) leaving no headspace and closed gas-tight using rubber stoppers and metal crimpers (both: diameter 20 mm, Glasgerätebau Ochs, Bovenden, Germany). Absolute abundances of specific functional target genes, including methane- and sulfate-cycling microorganisms, were measured with quantitative PCR (qPCR) after DNA was extracted (GeneMATRIX Soil DNA Purification Kit, Roboklon, Berlin, Germany) and quantified (Qubit 2.0 Fluorometer, ThermoFisher Scientific, Darmstadt, Germany). Surface and pore water parameters were measured in parallel to the gas measurements and soil coring for microbial analyses. Most surface water variables (pH, specific conductivity, salinity, nutrients, oxygen, sulfate and chloride concentrations, DOC/DIC) were measured in-situ using a multiparameter digital water quality meter or taken to the laboratory as water samples for further analysis. Likewise, pore water/soil variables (pH, specific conductivity, nutrients, metals, sulfate and chloride concentrations, CNS) were either measured in-situ or taken to the laboratory as soil samples. While surface water analysis was only conducted in the drainage ditch before rewetting, it was done along the entire transect after rewetting. In contrast, pore water/soil analysis was mostly conducted before rewetting and only repeated occasionally after rewetting where possible.

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