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Design and analysis of unreplicated plant breeding trials

Early generation plant breeding trials are often laid out according to unreplicated designs. Replicated checks may be used for error control, for example in augmented designs based on an incomplete block design for checks which are augmented with unreplicated entries. Traditional augmented designs require considerable resources to be spent on genotypes that are not themselves of interest. Therefore, it has been suggested to replace checks with partially replicated entries, leading to so-called prep designs. In the present proposal we suggest combining both ideas to develop what we call augmented prep designs. A non-trivial design problem arises when trials are to be performed at multiple locations. The main challenge then is how to augment the blocks so as to balance the number of pairwise concurrences. This task can be tackled in different ways based on the use (-arrays which are well-known as the basis for (-designs in fully replicated experiments. Furthermore, we also explore the refinement of designs when analysis by spatial models is envisioned. Robustness of the designs to the presence of genotype-environment interaction is also investigated.

Forschergruppe (FOR) 1525: INUIT - Ice Nuclei research UnIT, Kompositionsanalyse von Eisresiduen mittels der Kombination von Aerosol-Massenspektrometrie mit einem virtuellem Gegenstromimpaktor

Dieser Fortsetzungsantrag eines bestehenden Forschungsprojekts innerhalb der Forschergruppe INUIT (Ice Nuclei Research UnIT) hat zum Ziel, die physikalischen und chemischen Eigenschaften von atmosphärischen Eiskeimen (ice nucleating particles, INP) und Eispartikelresiduen (ice particle residuals, IPR) zu untersuchen. Es werden hauptsächlich zwei Messtechniken eingesetzt: virtueller Gegenstromimpaktor und Laserablationsmassenspektrometrie. Eiskeime (INP) aus atmosphärischem Aerosol werden erst in einem Eiskeimzähler aktiviert, so dass sich Eiskristalle bilden, die dann mit einem bepumpten Gegenstromimpaktor aufgrund ihrer Größe extrahiert und verdunstet werden können. Die freigesetzten INP können wiederum mit dem Massenspektrometer oder anderen Messtechniken untersucht werden. Dieses Experiment wird während einer Feldmesskampagne in der Nähe der Quellen von potentiell guten Eiskeimen (Mineralstaub, Biopartikel, anthropogene Partikel) durchgeführt. Ein geeigneter Kampagnenort hierfür ist die Mittelmeerregion, z.B. Südspanien. Die Eispartikelresiduen werden direkt aus unterkühlten Mischphasenwolken gesammelt. Hierzu wird ein spezieller Eis-Gegenstromimpaktor eingesetzt, der nur Eiskristalle sammelt und von den unterkühlten Wolkentröpfchen trennt. Nach der Sammlung wird das Eis der Eiskristalle verdunstet, so dass die Eisresidualpartikel freigesetzt werden und mittels des Laser- Ablationsmassenspektrometers analysiert werden können. Dieses Experiment wird auf einer Bergstation (Jungfraujoch) durchgeführt. Die Kombination aus Eiskeimzähler, bepumptem Gegenstromimpaktor und Massenspektrometer wird auch unter Laborbedingen zur Bestimmung der Eiskeimfähigkeit von internen und externen Partikelmischungen (z.B. biologisch/mineralisch) betrieben. Das Laserablationsmassenspektrometer in seiner Eigenschaft als Einzelpartikel-Analysegerät wird ebenfalls dazu eingesetzt, um den Mischungszustand der erzeugten Mischpartikel zu charakterisieren.

Einfluss von Ionen auf das atmosphärische Partikelwachstum - Studien an einem Flussreaktor und einer Aerosolkammer

Sekundäre Partikelneubildung ist eine Hauptquelle für atmosphärische Partikel mit wichtigen Folgen für das Klima und die menschliche Gesundheit. Dieses Vorhaben untersucht die Rolle von Luft Ionen bei der sekundären Partikelneubildung in Flussreaktor- und Aerosolkammer-Experimenten unter kontrollierten Laborbedingungen. Trotz beträchtlicher Fortschritte in der Messtechnik zur Untersuchung der atmosphärischen Nukleation und des Partikelwachstums bestehen weiterhin Verständnislücken hinsichtlich der grundlegenden physikalischen und chemischen Prozesse. Insbesondere die möglichen Effekte von Ionen-Partikel-Wechselwirkungen und von Ionenchemie auf die Partikelneubildung werden kontrovers diskutiert. In Ergänzung zu bestehenden Forschungsprogrammen hinsichtlich der Rolle von Ionen im initialen Nukleationsschritt wird vorgeschlagen, Ionen-Partikel-Wechselwirkungen während des anschließenden Partikelwachstums zu untersuchen und sich dabei auf direkte Messungen des Ladungszustands, der Wachstumsraten und der chemischen Zusammensetzung von sekundärem organischem Aerosol zu konzentrieren. Hierzu werden der Ladungszustand und die Wachstumsraten von Partikelpopulationen mit einem modifizierten Mobilitätspartikelspektrometer unter wohldefinierten Randbedingungen in Laborexperimenten quantifiziert. In einem nächsten Schritt werden die neuartigen Messmöglichkeiten unseres Aerosol-Massenspektrometers CAChUP voll ausgeschöpft, um den Beitrag verschiedener organischer Vorläufergase zur chemischen Zusammensetzung von sekundärem organischen Aerosol bei variierenden Ladungszuständen zu quantifizieren. Schließlich werden die Ergebnisse dieser Experimente durch Messungen zur sekundären organischen Partikelbildung bei wohldefinierten Ionenkonzentrationen an einer Aerosolkammer überprüft. Die vorgeschlagene Forschungsagenda ist somit darauf abgestimmt, mögliche ladungs-katalysierte chemische Mechanismen bei der sekundären Aerosolbildung besser einzuordnen.

Sonderforschungsbereich Transregio 38 (SFB TRR): Strukturen und Prozesse der initialen Ökosystementwicklung in einem künstlichen Wassereinzugsgebiet; Structures and Processes of the Initial Ecosystem Development Phase in an Artificial Water Catchment, Teilprojekt C 04: Hydrologische Oberflächenprozesse während der Entwicklungsphase eines künstlichen Einzugsgebiets

Das Hauptziel des Projekts ist die Untersuchung und die Entwicklung von Methoden nicht nur zur punktuellen, sondern auch zur flächenhaften Bestimmung der Bodenfeuchte. Zur Anwendung sollen Geländetechniken wie Time-Domain Reflectrometry (TDR), Georadar (GPR), Elektrische Widerstand (ER), Elektromagnetische Induktion (EMI) sowie GNSS Scatterometry kommen. Eine der methodischen Hauptfragen ist die Nutzung der GNSS Scatterometry zur Ermittlung der Bodenfeuchte im Feldmaßstab. Eine weitere grundlegende Forschungsfrage wird die weitere Entwicklung der elektrischen und elektromagnetischen geophysikalischen Techniken für bodenkundliche Anwendungen sein.

Effect of agricultural intensification on cereal aphid-primary parasitoid-hyperparasitoid food web structures and interactions

Changes in agroecosystem management (e.g. landscape diversity, management intensity) affect the natural control of pests. The effects of agricultural change on this ecosystem service, however, are not universal and the mechanisms affecting it remain to be understood. As biological control is effectively the product of networks of interactions between pests and their natural enemies, food web analysis provides a versatile tool to address this gap of knowledge. The proposed project will utilize a molecular food web approach and examine, for the first time, how changes in plant fertilisation and landscape complexity affect quantitative aphid-parasitoid-hyperparasitoid food webs on a species-specific level to unravel how changes in food web interactions affect parasitoid aphid control. Based on the fieldderived data, cage experiments will be conducted to assess how parasitoid diversity and identity affect parasitoid interactions and pest control, complementing the field results. The work proposed here will take research on parasitoid aphid control one step further, as it will provide a clearer understanding of how plant fertilization affects whole aphid-parasitoid food webs in both simple and complex landscapes, allowing for further improvements in natural pest control.

Immobilisation of arsenic in paddy soil by iron(II)-oxidizing bacteria

Arsenic-contaminated ground- and drinking water is a global environmental problem with about 1-2Prozent of the world's population being affected. The upper drinking water limit for arsenic (10 Micro g/l) recommended by the WHO is often exceeded, even in industrial nations in Europe and the USA. Chronic intake of arsenic causes severe health problems like skin diseases (e.g. blackfoot disease) and cancer. In addition to drinking water, seafood and rice are the main reservoirs for arsenic uptake. Arsenic is oftentimes of geogenic origin and in the environment it is mainly bound to iron(III) minerals. Iron(III)-reducing bacteria are able to dissolve these iron minerals and therefore release the arsenic to the environment. In turn, iron(II)-oxidizing bacteria have the potential to co-precipitate or sorb arsenic during iron(II)- oxidation at neutral pH followed by iron(III) mineral precipitation. This process may reduce arsenic concentrations in the environment drastically, lowering the potential risk for humans dramatically.The main goal of this study therefore is to quantify, identify and isolate anaerobic and aerobic Fe(II)-oxidizing microorganisms in arsenic-containing paddy soil. The co-precipitation and thus removal of arsenic by iron mineral producing bacteria will be determined in batch and microcosm experiments. Finally the influence of rhizosphere redox status on microbial Fe oxidation and arsenic uptake into rice plants will be evaluated in microcosm experiments. The long-term goal of this research is to better understand arsenic-co-precipitation and thus arsenic-immobilization by iron(II)-oxidizing bacteria in rice paddy soil. Potentially these results can lead to an improvement of living conditions in affected countries, e.g. in China or Bangladesh.

Ecological valuation of crop pollination in traditional Indonesian homegardens

Traditional Indonesian homegardens harbour often high crop diversity, which appears to be an important basis for a sustainable food-first strategy. Crop pollination by insects is a key ecosystem service but threatened by agricultural intensification and land conversion. Gaps in knowledge of actual benefits from pollination services limit effective management planning. Using an integrative and agronomic framework for the assessment of functional pollination services, we will conduct ecological experiments and surveys in Central Sulawesi, Indonesia. We propose to study pollination services and net revenues of the locally important crop species cucumber, carrot, and eggplant in traditional homegardens in a forest distance gradient, which is hypothesized to affect bee community structure and diversity. We will assess pollination services and interactions with environmental variables limiting fruit maturation, based on pollination experiments in a split-plot design of the following factors: drought, nutrient deficiency, weed pressure, and herbivory. The overall goal of this project is the development of 'biodiversity-friendly' land-use management, balancing human and ecological needs for local smallholders.

Dynamic (redox) interfaces in soil - Carbon turnover in microbial biomass and flux into soil organic matter

Existing models of soil organic matter (SOM) formation consider plant material as the main source of SOM. Recent results from nuclear magnetic resonance analyses of SOM and from own incubation studies, however, show that microbial residues also contribute to a large extent to SOM formation. Scanning electron microscopy showed that the soil mineral sur-faces are covered by numerous small patchy fragments (100 - 500 nm) deriving from microbial cell wall residues. We will study the formation and fate of these patchy fragments as continuously produced interfaces in artificial soil systems (quartz, montmorillonite, iron oxides, bacteria and carbon sources). We will quantify the relative contributions of different types of soil organisms to patchy fragment formation and elucidate the effect of redox con-ditions and iron mineralogy on the formation and turnover of patchy fragments. The develop-ment of patchy fragments during pedogenesis will be followed by studying soil samples from a chronosequence in the forefield of the retreating Damma glacier. We will characterize chemical and physical properties of the patchy fragments by nanothermal analysis and microscale condensation experiments in an environmental scanning electron microscope. The results will help understanding the processes at and characteristics of biogeochemical interfaces.

Quantification of the influence of current use fungicides and climate change on allochthonous Organic MATer decomposition in streams (QUANTOMAT)

The decomposition of terrestrial organic material such as leaf litter represents a fundamental ecosystem function in streams that delivers energy for local and downstream food webs. Although agriculture dominates most regions in Europe and fungicides are applied widely, effects of currently used fungicides on the aquatic decomposer community and consequently the leaf decomposition rate are largely unknown. Also potential compensation of such hypothesised adverse effects due to nutrients or higher average water temperatures associated with climate change are not considered. Moreover, climate change is predicted to alter the community of aquatic decomposers and an open question is, whether this alteration impacts the leaf decomposition rate. The current projects follows a tripartite design to answer these research questions. Firstly, a field study in a vine growing region where fungicides are applied in large amounts will be conducted to whether there is a dose-response relationship between the exposure to fungicides and the leaf decomposition rate. Secondly, experiments in artificial streams with field communities will be carried out to assess potential compensatory mechanisms of nutrients and temperature for effects of fungicides. Thirdly, field experiments with communities exhibiting a gradient of taxa sensitive to climate change will be used to investigate potential climate-related effects on the leaf decomposition rate.

Release of hexavalent chromium from ore processing residues and the potential of biochar for chromium immobilization in polluted soils

Chromium (Cr) is introduced into the environment by several anthropogenic activities. A striking ex-ample is the area around Kanpur in the Indian state of Uttar Pradesh, where large amounts of Cr-containing wastes have been recently illegally deposited. Hexavalent Cr, a highly toxic and mobile contaminant, is present in significant amounts in these wastes, severely affecting the quality of sur-roundings soils, sediments, and ground waters. The first major goal of this study is to clarify the solid phase speciation of Cr in these wastes and to examine its leaching behavior. X-ray diffraction and synchrotron-based X-ray absorption spectroscopy techniques will be employed for quantitative solid phase speciation of Cr. Its leaching behavior will be studied in column experiments performed at un-saturated moisture conditions with flow interruptions simulating monsoon rain events. Combined with geochemical modeling, the results will allow the evaluation of the leaching potential and release kinetics of Cr from the waste materials. The second major goal is to investigate the spatial distribution, speciation, and solubility of Cr in the rooting zone of chromate-contaminated soils surrounding the landfills, and to study the suitability of biochar as novel soil amendment for mitigating the deleterious effects of chromate pollution. Detailed field samplings and laboratory soil incubation studies will be carried out with two agricultural soils and biochar from the Kanpur region.

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