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Microscale profiles of oxygen, pH and temperature through the sea surface microlayer in a mesocosm experiment during an algal bloom

The sea surface microlayer (SML) is the boundary layer on top of all oceans and is crucial for all exchange processes between the ocean and atmosphere. This less than 1 mm thick layer is heavily influenced by biological processes and events like algal blooms. To quantify the influence of an algal bloom in a controlled environment, we conducted a mesocosm study at the Sea sURface Facility (SURF) of the Institute for Chemistry and Biology of the Marine Environment (ICBM) in Wilhelmshaven, Germany (53.5148 °N, 8.1463°E). SURF is an 8.5 m long, 2 m wide and 1 m deep water basin, which can directly be filled with seawater from the Jade Bay, North Sea. The facility is equipped with a retractable roof, pumps for water circulation and dedicated mounts for multiple sensor systems. The mesocosm experiment was conducted from 18 May to 16 June 2023 as part of the project BASS (Biogeochemical processes and Air-sea exchange in the Sea-Surface microlayer). SURF was filled with seawater a few days before the start of the experiment (water depth 0.7 m). The water was then filtered and the surface skimmed to remove initial pollution. To prevent particle and microbial sedimentation during the experiment, the pumps operated at low speed to maintain gentle mixing of the water column. The roof of SURF was closed during the night, while it was open during the day except when it rained. To induce an algal bloom, a mix of nutrients (nitrogen, phosphorus and silicate) was added on 26 May, 30 May and 01 June. Based on the chlorophyll measurements which show the development of the bloom, three phases of the experiment were determined: the pre-bloom phase (18 May to 26 May), the bloom phase (27 May to 04 June) and the post-bloom phase (05 June to 16 June). Several physical, chemical and biological parameters were measured, which will be published in other datasets. To evaluate the impact of the algal bloom within the SML, oxygen concentration, pH, and temperature were measured in situ using microsensors (UNISENSE, Denmark) mounted on a MicroProfiling System (UNISENSE, Denmark). With this setup, direct in situ measurements inside both the thermal boundary layer and diffusion boundary layer at the sea surface can be made. One oxygen microsensor, two pH microsensors and three temperature microsensors were mounted on the microprofiler with their tips pointing upward to avoid disturbance in the SML. They were positioned a few centimeters apart. The microprofiler was used to automatically move the sensors down, from the air through the SML and into the underlying water over a total distance of 10 000 µm in steps of 125 µm (250 µm at the start of the experiment). At each depth, the sensors stayed for about 10 s, giving a mean value and a standard deviation over that time. Three of these measurements were taken at every depth before the sensor moved down to the next step. After completing a profile, the microprofiler returned to its initial position with the tips in the air to start the next profile. The resulting profiles mostly took between 40 to 50 minutes. These profiles were conducted continuously during day and night, except for small breaks to clean and if needed replace or readjust the sensors and recalibrate the pH sensors. The sensors' height required manual adjustment to position the tip precisely at the water surface (0 µm). Through this manual adjustment, small inaccuracies may occur. As a result, the sensor depth readings form the microprofiler system may not reflect the true sensor position, which can also vary between the sensors. The true sensor positions can later be obtained by analysing the measured profiles.

Multibeam bathymetry processed data (dataset compilation) of RV POLARSTERN & RV MARIA S. MERIAN during 44 cruises from 1984 to 2024, Fram Strait, Greenland Sea, Arctic Ocean

The Long-Term Ecological Research observatory HAUSGARTEN was established by the Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung in the Fram Strait in summer 1999 to detect and track the impact of large-scale environmental changes on the marine ecosystem in the transition zone between the northern North Atlantic and the central Arctic Ocean. In this area, bathymetric data have been recorded with multibeam echosounders during 44 research expeditions on RV Polarstern and RV Maria S. Merian since 1984. From these data, a digital elevation model was generated and geostatistical analyses were performed to calculate geospatial derivatives and quantitative terrain descriptors for subsequent terrain analyses and habitat mapping. The dataset covers an area from 78°N to 81°N and 6°W to 12°E. To create the data product, archive data was used from seven different multibeam echosounders in various raw data formats. This data has been processed and cleaned with CARIS HIPS & SIPS, including sound velocity correction for datasets from 1999 and newer. Older datasets are calculated with a static sound velocity of 1500 m/s. Soundings where exported for gridding with Generic Mapping Tools (GMT) nearneighbor. The resulting Digital Elevation Model (DEM) is in the WGS84/Arctic Polar Stereographic (EPSG:3995) projection with a cell size of 100m x 100m. The hillshade was computed with a combination of slope and synthetic illumination with a vertical exaggeration of 10. Slope inclination was calculated with GDAL tool Slope with the formula of Zevenbergen and Thorne (1987) in degree. Terrain Ruggedness Index (TRI) was computed with the QGIS tool Ruggedness index following the approach of Riley et al. (1999) in meters. For the Bathymetric Position Indices (BPI), focal statistics have been calculated with the GRASS tool "r.neighbors" and the QGIS raster calculator following the concept of the Topographic Position Index (Weiss, 2001) with a circular reference area of 99 cells (broad) and 9 cells (fine). The additional coverage polygon layer gives and overview on the used datasets and their corresponding metadata. The map gives an overview on the LTER HAUSGARTEN area and the HAUSGARTEN 2024 DEM.

Chemical analysis for explosive compounds in water, sediment, and flatfish Limanda limanda (dab) collected from shipwrecks in the North Sea to assess the biological effects of old World War munitions

This dataset documents field investigations on release of legacy World War I munition explosive compounds into the surrounding marine environment, with a focus on shipwreck sites in the North Sea. Three historically well-documented wrecks were selected: the light cruisers SMS Mainz and SMS Ariadne, and the minelayer submarine UC30. These wrecks were chosen based on detailed archival information regarding their sinking circumstances and cargo, their unambiguous identification, and their accessibility for scientific diving operations. As a munition-free control, a reference area outside known wreck fields was sampled (Naturschutzgebiet Borkum Riffgrund). The flatfish Limanda limanda (dab) was selected as a sentinel species. Sampling was conducted during several cruises with the research vessel Heincke (HE 573, April 2021 – SMS Mainz; HE 596, April 2022 – UC30 and SMS Ariadne; HE 607, September 2022 – UC30; HE 613, February 2023 – SMS Ariadne) and with the Uthörn (May 2022 – reference site). Water was sampled with a CTD rosette water sampler at different depths and processed on board by solid phase extraction at 4 °C. Sediment was sampled with a Van Veen grab sampler and frozen at -20 °C. Fish were caught using bottom trawls deployed as close as possible to the wreck structures. Captured fish were transferred to seawater tanks prior to dissection. Each specimen was measured, weighed, and assessed biometrically to calculate condition factors as indicators of general health. Tissue samples were immediately frozen in liquid nitrogen and stored at -20 °C. Samples were processed in the lab according to established protocols. All samples were analyzed by gas chromatography triple quadrupole mass spectrometry (GC-MS/MS) for the explosive TNT and its metabolites 2- and 4-ADNT.

KOSMOS 2023 Helgoland mesocosm study on ocean alkalinity enhancement: sediment trap particle flux data and water column biogeochemistry

The data presented herein originates from a mesocosm study conducted as part of the BMBF CDRmare, Retake project (grant agreement no. 03F0895A), aimed at investigating the ecological ramifications of ocean alkalinity enhancement (OAE). Twelve mesocosms were deployed in Helgoland South Harbor, Germany, and systematically sampled using integrated water samplers over the period spanning from March 12th to April 20th, 2023. Six alkalinity levels under two dilution scenarios were established to differentiate between localized and uniform OAE additions. Alkalinity was increased stepwise to ΔTAmax = 1250 μmol kg-1 (250 μmol TA kg-1 increments) using sodium hydroxide (NaOH) with calcium chloride (CaCl2) to simulate cation release during calcium-based mineral dissolution, causing strong carbonate chemistry perturbations (e.g., pHT > 9.25). The dataset encompasses a spectrum of sediment trap particle flux data, water column biogeochemistry including pigment variables, inorganic nutrients, carbonate chemistry parameters. The study and data set offer insights into impacts of alkalinity enhancement on marine ecosystems and their associated biogeochemistry.

Observational dataset of behavioral response of three-spined sticklebacks to TNT exposure in a closed laboratory setup

Dumped munition in the German North Sea and Baltic Sea pose environmental risks as corrosion of the munition shells results in the leakage of the explosive 2,4,6-trinitroluene (TNT) into the marine environment. Uptake of TNT by marine biota and the associated negative effects on organisms are of major concern. This dataset reports behavioral responses of three-spined stickleback (Gasterosteus aculeatus) to environmentally relevant concentrations of TNT. Experimental sticklebacks were laboratory-bred and held in groups of 30 individuals in 60 L tanks in the fish facilities at the Thünen Institute of Fisheries Ecology in Bremerhaven. Parental sticklebacks originated from the Weser estuary (Luneplate, Bremerhaven, Germany, 53°28'36.9" N; 8°31'08.9" E) and were collected in April 2023. A total of 60 sticklebacks were tested in a controlled laboratory setup at the fish facilities at the Thünen Institute in Bremerhaven, containing two hideout zones formed by artificial plants. Each hideout was connected to an infusion system delivering either a TNT solution (100 µg/L) or control water into the zone currently occupied by the fish. Experimental trials were video-recorded to enable post hoc behavioral analysis. Behavioral metrics included the total time spent in the exposed hideout zone (s), latency to first leave the exposed hideout zone (s), and the number of crossings between hideout zones.

Copernicus Contributing Missions Online

As part of the Copernicus Space Component programme, ESA manages the coordinated access to the data procured from the various Contributing Missions and the Sentinels, in response to the Copernicus users requirements. The Data Access Portfolio documents the data offer and the access rights per user category. The CSCDA portal is the access point to all data, including Sentinel missions, for Copernicus Core Users as defined in the EU Copernicus Programme Regulation (e.g. Copernicus Services).The Copernicus Space Component (CSC) Data Access system is the interface for accessing the Earth Observation products from the Copernicus Space Component. The system overall space capacity relies on several EO missions contributing to Copernicus, and it is continuously evolving, with new missions becoming available along time and others ending and/or being replaced.

Umweltprobenbank des Bundes (German Environmental Specimen Bank)

Die Umweltprobenbank des Bundes (UPB) mit ihren Bereichen Bank für Umweltproben und Bank für Humanproben ist eine Daueraufgabe des Bundes unter der Gesamtverantwortung des Bundesumweltministeriums sowie der administrativen und fachlichen Koordinierung des Umweltbundesamtes. Es werden für die Bank für Umweltproben regelmäßig Tier- und Pflanzenproben aus repräsentativen Ökosystemen (marin, limnisch und terrestrisch) Deutschlands und darüber hinaus für die Bank für Humanproben im Rahmen einer Echtzeitanalyse Blut-, Urin-, Speichel- und Haarproben studentischer Kollektive gewonnen. Vor ihrer Einlagerung werden die Proben auf eine Vielzahl an umweltrelevanten Stoffen und Verbindungen (z.B. Schwermetalle, CKW und PAH) analysiert. Der eigentliche Wert der Umweltprobenbank besteht jedoch in der Archivierung der Proben. Sie werden chemisch veränderungsfrei (über Flüssigstickstoff) gelagert und somit können auch rückblickend Stoffe untersucht werden, die zum Zeitpunkt ihrer Einwirkung noch nicht bekannt oder analysierbar waren oder für nicht bedeutsam gehalten wurden. Alle im Betrieb der Umweltprobenbank anfallenden Daten und Informationen werden mit einem Datenbankmanagementsystem verwaltet und aufbereitet. Hierbei handelt es sich insbesondere um die biometrischen und analytischen Daten, das Schlüsselsystem der UPB, die Probenahmepläne, die Standardarbeitsanweisungen (SOP) zu Probenahme, Transport, Aufbereitung, Lagerung und Analytik und die Lagerbestandsdaten. Mit einem Geo-Informationssystem werden die Karten der Probenahmegebiete erstellt, mit denen perspektivisch eine Verknüpfung der analytischen Ergebnisse mit den biometrischen Daten sowie weiteren geoökologischen Daten (z.B. Daten der Flächennutzung, der Bodenökologie, der Klimatologie) erfolgen soll. Ausführliche Informationen und eine umfassende Datenrecherche sind unter www.umweltprobenbank.de abrufbar.

Weiterentwicklung der Erfassungsmethoden im marinen Biodiversitätsmonitoring – digitale Surveymethoden und Machine-Learning-Techniken für eine automatisierte Detektion von Tierindividuen

Die effektive Überwachung mariner Schutzgüter erfordert eine kontinuierliche Optimierung der Erfassungsmethoden. Insbesondere die zunehmende Offshore-Windenergienutzung stellt die traditionelle Erfassung mariner Wirbeltiere, v. a. mit Hilfe von Beobachterinnen und Beobach-tern in Flugzeugen und manueller Datenauswertung, vor neue Herausforderungen. Das Bundesamt für Naturschutz (BfN) setzt daher digitale Monitoringmethoden in Form von flugzeuggestützten Luftbildaufnahmen ein und entwickelt im Rahmen eines aktuellen Forschungsprojekts eine automatisierte Detektion mariner Tierarten mittels Machine Learning. Der vorliegende Artikel beschreibt die Entwicklung und Evaluierung innovativer digitaler Verfahren zur Klassifikation von Seevögeln und Meeressäugern in Luftbildern. Durch den Einsatz von heuristischen Ansätzen und Deep-Learning-Technologien kann zukünftig eine effiziente und kostengünstige Erfassung ermöglicht werden, um langfristig belastbare Datensätze zu Größen und zur räumlichen und zeitlichen Verteilung der Populationen mariner Wirbeltiere sowie zur Bewertung menschlicher Einflüsse auf marine Ökosysteme zu gewinnen. Zudem wird die zukünftige Rolle automatisierter Erfassungsmethoden untersucht.

Colored dissolved organic matter (CDOM) absorption coefficients in the sea-surface microlayer and the underlying water during a mesocosm phytoplankton bloom in 2023

The effects of a phytoplankton bloom and photobleaching on colored dissolved organic matter (CDOM) in the sea-surface microlayer (SML) and the underlying water (ULW) were studied in a month-long mesocosm study, in May and June of 2023, at the Institute for Chemistry and Biology of the Marine Environment (ICBM) in Wilhelmshaven, Germany. The mesocosm study was conducted by the DFG research group BASS (Biogeochemical processes and Air–sea exchange in the Sea-Surface microlayer, Bibi et al., 2025) in the Sea Surface Facility (SURF) of the ICBM. The facility contains an 8 m × 1.5 m × 0.8 m large outdoor basin with a retractable roof, which was closed at night and during rain events. The basin was filled with North Sea water from the adjacent Jade Bay. Homogeneity of the ULW in the basin was achieved by constant mixing of the water column. The daily SML and ULW samples were collected alternating in the morning, about 1 h after sunrise, and in the afternoon, about 10 h after sunrise. The alternation of sampling times intended to capture a potential effect of sun-exposure duration on DOM transformations and elucidated the day and night variability of the layers. The SML was collected via glass plate sampling (Cunliffe and Wurl, 2014). The ULW was sampled via a submerged tube and a connected syringe suction system in 0.4 m depth. The removed sample volume was refilled with Jade Bay water every day. SML and ULW samples were filtered through pre-flushed 0.7 µm Whatman GF/F and 0.2 nucleopore filters into brown bottles and were stored dark and at 4 °C until measurement within weeks of the study. The brown bottles were previously combusted at 500 °C. CDOM was measured with three liquid waveguide capillary cells (LWCC, WPI, USA) of different pathlengths (10 cm, 50 cm, 250 cm) to increase the measurement sensitivity following the protocols of Röttgers et al. (2024) using a spectral detector (Avantes, Netherlands) for a total spectral range from 230 to 750 nm. A sodium chloride (NaCl) solution was used for the salinity correction. The blank-corrected absorbance spectra were then converted into Napierian absorption coefficients (Bricaud et al., 1981).

PARAFAC components and fluorescent dissolved organic matter (FDOM) indices on organic matter transformation processes in the sea-surface microlayer and the underlying water during a mesocosm phytoplankton bloom in 2023

The effects of a phytoplankton bloom and photobleaching on colored dissolved organic matter (CDOM) in the sea-surface microlayer (SML) and the underlying water (ULW) were studied in a month-long mesocosm study, in May and June of 2023, at the Institute for Chemistry and Biology of the Marine Environment (ICBM) in Wilhelmshaven, Germany. The mesocosm study was conducted by the DFG research group BASS (Biogeochemical processes and Air–sea exchange in the Sea-Surface microlayer, Bibi et al., 2025) in the Sea Surface Facility (SURF) of the ICBM. The facility contains an 8 m × 1.5 m × 0.8 m large outdoor basin with a retractable roof, which was closed at night and during rain events. The basin was filled with North Sea water from the adjacent Jade Bay. Homogeneity of the ULW in the basin was achieved by constant mixing of the water column. The daily SML and ULW samples were collected alternating in the morning, about 1 h after sunrise, and in the afternoon, about 10 h after sunrise. The alternation of sampling times intended to capture a potential effect of sun-exposure duration on DOM transformations and elucidated the day and night variability of the layers. The SML was collected via glass plate sampling (Cunliffe and Wurl, 2014). The ULW was sampled via a submerged tube and a connected syringe suction system in 0.4 m depth. The removed sample volume was refilled with Jade Bay water every day. SML and ULW samples were filtered through pre-flushed 0.7 µm Whatman GF/F and 0.2 nucleopore filters into clear 40 ml SUPELCO bottles. These bottles were acid-washed twice and combusted at 500 °C for 5 h. The samples were stored dark and at 4 °C and measured within a few months of the study. FDOM was measured using a Aqualog fluorescence spectrometer (Horiba Scientific, Japan) with 10 seconds integration time and high gain of the CCD (charge-coupled device) sensor within an excitation range from 240 to 500 nm, and an emission range from 209.15 to 618.53 nm. The Aqualog measures fluorescence as well as absorption. The resulting data includes an excitation-emission-matrix (EEM) of the blank (MilliQ Starna cuvette), an EEM of the sample, and the absorption values of the sample. The raw exported Aqualog data was corrected for errors and lamp shifts. The corrected EEM data is then decomposed by PARAFAC (Murphy et al., 2013) for its underlying fluorophore components. Before running the PARAFAC routine, the corrected data needed to undergo a correction process by subtracting the blank from the sample EEM and canceling the influences of the inner-filter effect (IFE, Parker & Rees, 1962; Kothawala et al., 2013). The fluorescence intensity of the IFE-corrected EEM is calibrated by using the Raman scatter peak of water (Lawaetz & Stedmon, 2009). For PARAFAC the corrected data was processed using the drEEM and NWAY toolbox (version 0.6.5; Murphy et al., 2013) in MATLAB (R2020b). A 4-component model was validated with the validation style S4C6T3 for the split half analysis with nonnegativity constraints and 1-8e as the convergence criteria with 50 random starts and a maximum number of 2500 iterations. The resulting final model had a core consistency of 82.04 and the explained percentage was 99.54%. Furthermore, four fluorescence indices were calculated from the corrected EEM data (HIX – Humification index, Zsolnay et al., 1999; BIX – Biological index, Huguet et al., 2009; REPIX – Recently produced index, Parlanti et al., 2000, Drozdowska et al., 2015; ARIX, Murphy, 2025).

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